PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g051060.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 255aa MW: 28895.9 Da PI: 9.8076

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g051060.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	70	123	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Solyc06g051060.2.1 70 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQFMNIKGLSIAHVKSHLQMYRS 123 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-30	66	124	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.917	66	126	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-16	67	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-23	70	125	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-10	71	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKGGSSSTEE DSKSNPKQQI EFEEEEDVET EVNSKAQGTT RSSSSNSTVE ENGKKPNSAS 60 VRQYVRSKTP RLRWTPELHL RFVHAVERLG GQDRATPKLV LQFMNIKGLS IAHVKSHLQM 120 YRSKKTDDPN QISTDGRFLL ENGDHHIFNL TQLSRLHGFK QTSSSSLRYD TALWNRQANS 180 LYNPYNMNIG GGSSISTRHG FASHSSHEQL FPWNKSIEIE KNQNRHNQRF WPPITQIGTS 240 SEIIRARNDD TNPC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g051060.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010322168.1	1e-180	putative two-component response regulator ARR21 isoform X2
TrEMBL	A0A3Q7HNH9	1e-158	A0A3Q7HNH9_SOLLC; Uncharacterized protein
STRING	Solyc06g051060.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-48	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc06g051060.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]