PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc06g050520.1.1 | ||||||||
Common Name | DREB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 33301.4 Da PI: 4.6575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.3e-19 | 80 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p+ r r +lg+fgta eAa a++ a+++++g Solyc06g050520.1.1 80 CKYRGVRQRI-WGKWVAEIREPK----RgSRLWLGTFGTAIEAALAYDDAARAMYG 130 79*****998.**********83....46************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-31 | 80 | 139 | No hit | No description |
Pfam | PF00847 | 5.7E-14 | 80 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 81 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-36 | 81 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-19 | 81 | 138 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.943 | 81 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MAIMDEAANM VCVPLDYSRK RKSRSRRDRT KNVEETLAKW KEYNEKLDNE GKGKPVRKVP 60 AKGSKKGCMR GKGGPENWRC KYRGVRQRIW GKWVAEIREP KRGSRLWLGT FGTAIEAALA 120 YDDAARAMYG PCARLNLPNY ACDSVSWATT SASASASDCT VASGFGEVCP VDGALHEADT 180 PLSSVKDEGT AMDIVEPTSI DEDTLKSGWD CLDKLNMDEM FDVDELLAML DSTPVFTKDY 240 NSDGKHNNMV SDSQCQEPNA VVDPMTVDYG FDFLKPGRQE DLNFSSDDLA FIDLDSELVV 300 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 82 | 138 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 17 | 22 | SRKRKS |
2 | 20 | 27 | RKSRSRRD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc06g050520.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF500011 | 0.0 | Lycopersicon esculentum dehydration responsive element binding protein (DREB1) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234689.1 | 0.0 | dehydration responsive element binding 1 | ||||
TrEMBL | Q8GZF2 | 0.0 | Q8GZF2_SOLLC; Dehydration responsive element binding protein | ||||
STRING | Solyc06g050520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-41 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc06g050520.1.1 |
Entrez Gene | 543711 |
Publications ? help Back to Top | |||
---|---|---|---|
|