PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g035620.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 327aa    MW: 36608.1 Da    PI: 5.8824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g035620.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.71e-8661318104361
                GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                         ea  +e+r+HiiDf+i qG+QW+ LlqaLa+Rp+g+  +RiTg+++  s+  + + l ++++rL+ + ee+++ + f+++      +++ +
  Solyc06g035620.2.1  61 EACRNEDRIHIIDFQIAQGTQWMILLQALAARPGGALYVRITGIDDLVSQyaRGDGLAAVARRLSAISEEFNIAVAFHAV-PVFALEITWD 150
                         8999******************************************9888889**************************5.66666788** PP

                GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                         +L+v+pgEa aVn+ lqlh+++desv+ +++rd +++++ksl Pk+v++veqe+++n+++Fl+rf+eal+yy a+f+s++++l r+ +eri
  Solyc06g035620.2.1 151 MLDVRPGEAQAVNFPLQLHHTPDESVDANNPRDGLIRMIKSLCPKIVTLVEQESNTNTAPFLTRFVEALDYYHAMFESIDVTLLRDMKERI 241
                         ******************************************************************************************* PP

                GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         +vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k l+++++ d y++ e++g+++++
  Solyc06g035620.2.1 242 TVEQHYLARDIVNVIACEGKERVERHELLGKWKSRFKMAGFQQYPLSSFVNSVIKDLMKRYS-DHYTLVEQDGAMLIC 318
                         **************************************************************.66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.3381312IPR005202Transcription factor GRAS
PfamPF035143.6E-8461318IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEDLPLQGVP FSNLKSCLYV VSVTGDPIQR LGAYIVEGLV ERKELSGTTI YRSLKCKEPA  60
EACRNEDRIH IIDFQIAQGT QWMILLQALA ARPGGALYVR ITGIDDLVSQ YARGDGLAAV  120
ARRLSAISEE FNIAVAFHAV PVFALEITWD MLDVRPGEAQ AVNFPLQLHH TPDESVDANN  180
PRDGLIRMIK SLCPKIVTLV EQESNTNTAP FLTRFVEALD YYHAMFESID VTLLRDMKER  240
ITVEQHYLAR DIVNVIACEG KERVERHELL GKWKSRFKMA GFQQYPLSSF VNSVIKDLMK  300
RYSDHYTLVE QDGAMLICCG GGRSGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-41831620359GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.190180.0callus| flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g035620.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612450.0Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI039 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266225.10.0Hop-interacting protein THI039
RefseqXP_010313625.10.0hop-interacting protein THI039 isoform X1
SwissprotQ69VG11e-146CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A3Q7GTW20.0A0A3Q7GTW2_SOLLC; Uncharacterized protein
STRINGSolyc06g035620.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-128GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]