PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g035570.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 55aa MW: 6224.26 Da PI: 11.2887 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 7.7e-30 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng++KKA+ELSvLCda+va+iifs++g+l+ +ss Solyc06g035570.1.1 2 KRIENATSRQVTFSKRRNGVIKKAYELSVLCDAQVALIIFSNKGRLFQFSS 52 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.656 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.4E-31 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-26 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-18 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-18 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
MKRIENATSR QVTFSKRRNG VIKKAYELSV LCDAQVALII FSNKGRLFQF SSSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 6e-17 | 3 | 53 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 6e-17 | 3 | 53 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 6e-17 | 3 | 53 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 6e-17 | 3 | 53 | 9 | 59 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1n6j_A | 8e-17 | 1 | 53 | 7 | 59 | Myocyte-specific enhancer factor 2B |
1n6j_B | 8e-17 | 1 | 53 | 7 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_P | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
3mu6_A | 6e-17 | 3 | 53 | 9 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_B | 6e-17 | 3 | 53 | 9 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_C | 6e-17 | 3 | 53 | 9 | 59 | Myocyte-specific enhancer factor 2A |
3mu6_D | 6e-17 | 3 | 53 | 9 | 59 | Myocyte-specific enhancer factor 2A |
6c9l_A | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-17 | 3 | 53 | 10 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g035570.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019069748.1 | 2e-30 | MADS-box protein AGL42-like isoform X2 | ||||
Swissprot | Q9FIS1 | 2e-26 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A3Q7GTV0 | 5e-29 | A0A3Q7GTV0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g035570.1.1 | 9e-32 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 8e-29 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g035570.1.1 |
Publications ? help Back to Top | |||
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