PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g033870.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28586.3 Da PI: 8.1846 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 8e-14 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d ++++ +W+ ++ g+ Rt+k+c++rw +yl Solyc06g033870.1.1 19 KGAWSPQEDKKLIDHIAKYRIWNWSQMPKFAGLSRTGKSCRLRWINYL 66 79*****************999************************97 PP | |||||||
2 | Myb_DNA-binding | 39.4 | 1.4e-12 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE + +++ + lG++ ++Ia++++ gRt++++k++++++l Solyc06g033870.1.1 72 RGTFSLEETQTIIKMYQSLGNR-RSAIAKELP-GRTDNEIKNFYHTHL 117 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.81 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-25 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-8 | 21 | 66 | No hit | No description |
Pfam | PF13921 | 1.3E-12 | 22 | 82 | No hit | No description |
SMART | SM00717 | 1.6E-10 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.436 | 71 | 121 | IPR017930 | Myb domain |
CDD | cd00167 | 5.21E-8 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-21 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGEVVFQLQH GKNMGYVKKG AWSPQEDKKL IDHIAKYRIW NWSQMPKFAG LSRTGKSCRL 60 RWINYLRPDI KRGTFSLEET QTIIKMYQSL GNRRSAIAKE LPGRTDNEIK NFYHTHLKKH 120 VGTKVEVKPK SRKKAKQIEM STQKKPLITT NCPNIQSFDF TNSSSSSSYI IFDENYDFLE 180 TYNQENDVTS IVNQVDDENI VILESNPESI STSSVDLYIQ DFMDVSIDSS NVDFWLELYM 240 AADNLNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-23 | 19 | 121 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g033870.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468639 | 2e-11 | S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078427.1 | 0.0 | transcription factor MYB14-like | ||||
TrEMBL | K4C4L1 | 0.0 | K4C4L1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g033870.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-49 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g033870.1.1 |
Publications ? help Back to Top | |||
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