PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g009710.2.1
Common NameLOC101248582
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 298aa    MW: 34405.2 Da    PI: 4.727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g009710.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rgrWT eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Solyc06g009710.2.1 14 RGRWTSEEDEILTNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                        8*******************************99************97 PP
2Myb_DNA-binding48.61.9e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T +E+ +++++ + lG++ W++Ia++++ gRt++++k++w+++l
  Solyc06g009710.2.1  67 RGNITSDEEAIIIKLRATLGNR-WSLIAEHLP-GRTDNEIKNYWNSHL 112
                         7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.099961IPR017930Myb domain
SuperFamilySSF466893.63E-2711108IPR009057Homeodomain-like
SMARTSM007171.8E-111363IPR001005SANT/Myb domain
PfamPF002498.1E-141461IPR001005SANT/Myb domain
CDDcd001672.05E-71661No hitNo description
PROSITE profilePS5129424.0662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2465116IPR009057Homeodomain-like
SMARTSM007177.3E-1666114IPR001005SANT/Myb domain
PfamPF002499.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.14E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRTPCCEKV GLKRGRWTSE EDEILTNYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKSDLKRGNI TSDEEAIIIK LRATLGNRWS LIAEHLPGRT DNEIKNYWNS HLRRKVDSFR  120
IPGDEKLPQA VVELAKKGTQ VKHITKRGRS RRKIITRVSN STNENIEFDH IDDQMLWHDD  180
IVPMDANYEV LDQDFITNCL WDDQGENLEI TDDNDNNNNN NEILSEDNYG KWDWEYLSEI  240
LNNEICGNST KETEQNNNNN NMSLCDINDN VQNCMNKEAT QENIDPMQSD LVAWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g009710.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240653.10.0transcription factor MYB111-like
TrEMBLM1AB811e-168M1AB81_SOLTU; Uncharacterized protein
STRINGSolyc06g009710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-71myb domain protein 111
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]