PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g009480.1.1
Common NameLOC101246252
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 248aa    MW: 28872.5 Da    PI: 7.7344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g009480.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-141057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ +Ed +l++ +  +G g+W++ a+  g++R++k+c++rw++yl
  Solyc06g009480.1.1 10 KGPWSSDEDSKLIHSISIFGQGRWDSLAHVAGLKRSGKSCRLRWLNYL 57
                        79********************************************97 PP
2Myb_DNA-binding43.76.4e-1463106146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l++ ++ ++G++ W++Ia+ ++ gR+++++k++w++
  Solyc06g009480.1.1  63 RGKITPQEQLLILLLHFRFGNR-WSKIAENLP-GRSDNDVKNYWRT 106
                         8999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.846561IPR017930Myb domain
SuperFamilySSF466893.52E-277104IPR009057Homeodomain-like
SMARTSM007171.2E-13959IPR001005SANT/Myb domain
PfamPF002492.8E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-201164IPR009057Homeodomain-like
CDDcd001679.88E-101257No hitNo description
SMARTSM007173.4E-1362110IPR001005SANT/Myb domain
PROSITE profilePS5129415.13662112IPR017930Myb domain
PfamPF002493.2E-1363106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2065110IPR009057Homeodomain-like
CDDcd001672.35E-967106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKQVSMEMKK GPWSSDEDSK LIHSISIFGQ GRWDSLAHVA GLKRSGKSCR LRWLNYLRPN  60
LRRGKITPQE QLLILLLHFR FGNRWSKIAE NLPGRSDNDV KNYWRTKVQK HAKQLHCEIN  120
SQQFRHFLLY EWMPSLLAQQ IPTSSSSSSS SSSELIVMEN CFPNDINTYP NTNIISSTDS  180
FVKEDDSNIW KKLSSFEDGI NISHDFSTPS DMTLHNYSSH HVDDQYYFHN YWTSAEMPSL  240
YEMDLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-25211019126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g009480.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240646.20.0transcription factor MYB78-like
SwissprotQ10MB43e-64MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1U8FGX41e-108A0A1U8FGX4_CAPAN; transcription factor MYB108
TrEMBLA0A2G3C3H61e-108A0A2G3C3H6_CAPCH; Transcription factor
STRINGSolyc06g009480.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1539336
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-61myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]