PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g008610.2.1

Common Name

WRKYIId

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 349aa MW: 39052.1 Da PI: 10.0788

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g008610.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	281	339	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ed +++++tYegeHnh+ Solyc06g008610.2.1 281 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDASMLIVTYEGEHNHP 339 69**********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.0E-17	233	278	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.2E-34	269	340	IPR003657	WRKY domain
PROSITE profile	PS50811	30.4	275	341	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-27	278	340	IPR003657	WRKY domain
SMART	SM00774	3.7E-39	280	340	IPR003657	WRKY domain
Pfam	PF03106	2.5E-27	282	339	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEEIEEVNKA AVENCHRVIS LLSSRTHDQN SYTNLVRETG EAVHKFKKVV TLLNSTLGHA 60 RVRKSNKFMT PLPHNILVEN PNCKIDDQAK ALRLLPIDTP ENRVLEMGAN VKCNLTLGSP 120 SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QQQQQRRFLL QQQQQLKQPA EMMYRRSNSG 180 VSLNFDSSTC TPTMSSTRSF ISSLSVDGSV ANGNSFHLIG ASHSADQSSF QHKRKCSGRG 240 DEGSGKCGSS GRCHCSKKRK HRVKRSIKIP AVSNKLADIP SDEYSWRKYG QKPIKGSPHP 300 RGYYKCSSMR GCPARKHVER CLEDASMLIV TYEGEHNHPR LPSQLANT*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEEIEEVNKA AVENCHRVIS LLSSRTHDQN SYTNLVRETG EAVHKFKKVV TLLNSTLGHA  60
RVRKSNKFMT PLPHNILVEN PNCKIDDQAK ALRLLPIDTP ENRVLEMGAN VKCNLTLGSP  120
SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QQQQQRRFLL QQQQQLKQPA EMMYRRSNSG  180
VSLNFDSSTC TPTMSSTRSF ISSLSVDGSV ANGNSFHLIG ASHSADQSSF QHKRKCSGRG  240
DEGSGKCGSS GRCHCSKKRK HRVKRSIKIP AVSNKLADIP SDEYSWRKYG QKPIKGSPHP  300
RGYYKCSSMR GCPARKHVER CLEDASMLIV TYEGEHNHPR LPSQLANT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	268	342	2	75	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.3961	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g008610.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY157064	5e-90	Lycopersicon esculentum WRKY transcription factor IId-5 mRNA, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315198.1	0.0	WRKY transcription factor 21
Swissprot	O04336	1e-115	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A3Q7GRN2	0.0	A0A3Q7GRN2_SOLLC; Uncharacterized protein
STRING	Solyc06g008610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3271	23	50
Representative plant	OGRP1817	15	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-116	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	Solyc06g008610.2.1
Entrez Gene	543858

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]