PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g005180.1.1
Common NameLOC101252782
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 409aa    MW: 46374.1 Da    PI: 7.0767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g005180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000622344223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         C  C++ F++   L  H+r+H
  Solyc06g005180.1.1 23 YCRVCKRGFNSAGALGGHMRSH 44
                        5********************9 PP
2zf-C2H211.60.00084170192123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F+++  L  H  +H
  Solyc06g005180.1.1 170 FQCKGCKKIFNSHQALGGHRASH 192
                         89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0632244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0782244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
PfamPF139125.8E-52444IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-6169192No hitNo description
SMARTSM003550.47170192IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-7170194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-6248275No hitNo description
PfamPF139124.1E-12252276IPR007087Zinc finger, C2H2
SMARTSM003550.29253275IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307253275IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVDNNNNNNS QKNEPSTHVL LLYCRVCKRG FNSAGALGGH MRSHGSVGDN SGSNKNYGED  60
ISEQKYMMNN FRREKLEGQK HSYNLRTNSN RLMLGNNRST SDHDHDHVDV EKSEYYYYGP  120
DVKDKQHCSR EEEEDLANCL VMLSNKSYDL SDNSNKEAKN KAKEVEKGMF QCKGCKKIFN  180
SHQALGGHRA SHKKVKGCYA AKLDDNNDDD DNDIDDDSII SPSDLILHQE SNDFQSQSPT  240
SSSSFSRKRS RVHQCSICHR VFSSGQALGG HKRCHWLTSS LPEATFIPTF QEIQYHNQEQ  300
VLYNKPLFIN NSHQPLDLNF PEQLGNPTEV GLKLHNNPFE HEGPRSQLQL WTEDTNQNHK  360
RKDSLCREEN RKAKEAKLSN LKDVNLDKGS SSWLQVGIGP TPDIFATL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g005180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240604.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7GR950.0A0A3Q7GR95_SOLLC; Uncharacterized protein
STRINGSolyc06g005180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-24C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]