PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g056120.2.1
Common NameLOC101251289
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 328aa    MW: 35850.2 Da    PI: 5.9327
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g056120.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18229262134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C  tkTp+WR gp g+ktLCnaCG++y++ +
  Solyc05g056120.2.1 229 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 262
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-732315IPR016679Transcription factor, GATA, plant
SMARTSM004018.5E-17223273IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556223259IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15227286No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15227260IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.92E-15228275No hitNo description
PfamPF003205.0E-16229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGSNVVDEID CGSFFDHIDD LIDFPLESEN VGLSSTDCKD FPSIWNDPLP DSDSLFSGSH  60
RNSASDLSAE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENIPVEKEP SSQGKFQTSS  120
PVSVLESSSS SSSSFSSSGE KTLPLSPCHR GPQRARTKRP RPTTFNPFPV FVAPVVPTES  180
ENFAESPMKK ILKPAEPEQK KKKKIKFSIP LAPVETNQNP VAQQAVRKCQ HCEITKTPQW  240
RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPALH SNSHKKVLEM RTTIVPDNDI  300
IARTSSPAIA TQLEFNPSNV SVEEEHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.128630.0callus| flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g056120.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826480.0Solanum lycopersicum chromosome 5 clone C05HBa0239D11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239665.10.0GATA transcription factor 8-like isoform X2
TrEMBLA0A3Q7GQX20.0A0A3Q7GQX2_SOLLC; GATA transcription factor
STRINGSolyc05g056120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-41GATA family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]