PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g056040.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 651aa MW: 74231.9 Da PI: 5.4061 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.8 | 3.6e-22 | 129 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k lt+sd ++ l++p k a ++ ++k++ ++l+ +d++g++W++k+ ++++++r+ lt+GW+ Fv +++L +gD vvF Solyc05g056040.2.1 129 FCKCLTQSDIKSNWGLSVPLKDAVKCfppldmRQEKPC-QELIAKDLKGNEWRFKHAHQGQPRRHSLTNGWSTFVTSKKLLAGDLVVFL-- 216 99****************************97444455.59************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 ++++++l+v+++r Solyc05g056040.2.1 217 RDETGKLHVGIRR 229 569999*****98 PP | |||||||
2 | Auxin_resp | 28 | 9.3e-11 | 254 | 313 | 1 | 59 |
Auxin_resp 1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59 a+ha++tks F v+ +P ++s+F+ +++k+ + ++ + vGm +m++e+ed + r Solyc05g056040.2.1 254 ASHAFATKSLFFVYQKPCYnKSSQFIMSMSKYFEGGNHGIGVGMISRMQIESEDYCHVRR 313 689**************861678*******************************877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-34 | 121 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.02E-28 | 124 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.87E-21 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.055 | 129 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-18 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-19 | 129 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-7 | 254 | 312 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MVDQLRFSQQ KYLNHMPFKG DDDLCREIWK ACSGSLLDVS KAGERVYYFP RLHVEQLEQS 60 SNQELIEKLQ LSNLPPKILC RVLHIRLLVE HETEEVYAET ILIPNQDQNE PTAADFSPLD 120 NPRPQFQSFC KCLTQSDIKS NWGLSVPLKD AVKCFPPLDM RQEKPCQELI AKDLKGNEWR 180 FKHAHQGQPR RHSLTNGWST FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQHCSVGAS 240 TFSRQSMEVV LAVASHAFAT KSLFFVYQKP CYNKSSQFIM SMSKYFEGGN HGIGVGMISR 300 MQIESEDYCH VRRTNDLEQI SLSQSQQTTN FMLEEDQYMQ DSEAVLDCAQ STMIDLEIRQ 360 QTIGSLNNIH CFAPVEDNGL QLHAAVAREN NEGSIPKDTV STHTRDEDLY ELFKDFDFPD 420 STNTSLDTIA LDLGSDWFRS TLQEQEETVT PSQPNASEDH SRRTSSVLEH PNSFRVMSIS 480 SNPSQIPYEG PGRGDEQVPW GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE 540 ILAELVYFLD NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFSMESLLQ 600 RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNSPM RLQSVLEGLL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldw_A | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldw_B | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldy_A | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldy_B | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23567 | 0.0 | flower| fruit| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g056040.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM565129 | 0.0 | Solanum lycopersicum auxin response factor 13-1 (ARF13-1) mRNA, complete cds, alternatively spliced |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001303697.1 | 0.0 | auxin response factor 24 isoform 1 | ||||
TrEMBL | A0A3Q7GN90 | 0.0 | A0A3Q7GN90_SOLLC; Auxin response factor | ||||
STRING | Solyc05g056040.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14593 | 7 | 8 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 5e-98 | auxin response factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g056040.2.1 |
Entrez Gene | 100750255 |
Publications ? help Back to Top | |||
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