PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g055940.2.1 | ||||||||
Common Name | LOC101257079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 45922.2 Da PI: 6.5615 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.1 | 1.9e-33 | 253 | 307 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe Fvea+++LGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Solyc05g055940.2.1 253 KPRMRWTPELHEVFVEAISKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 307 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.363 | 250 | 310 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-18 | 251 | 307 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-31 | 251 | 309 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-25 | 253 | 307 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-9 | 255 | 306 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.4E-24 | 338 | 383 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MNTRRALGIQ RSSETQHSNM GVCGAMSTSL SILPSFEEKH LKVTDSLHVL TEKEQTTNLI 60 SSRAIPSASK SGTVGHLLSS TSGPHKHFHF SSTPSRESRK HNYPFISSEA SAATCQSSLS 120 NIHSTSLDNY PMENSNNSWG EDAYHDCINF STNVPVQNDQ VESLAVVMTS DDQVKRSDWQ 180 DWADQLINDD DVLDSSWSNI LVDINPPDTK FLRASEVHAG QSDTLPPPLP AAAASSGQNY 240 PVGSPSSTAA QTKPRMRWTP ELHEVFVEAI SKLGGSEKAT PKGVLKLMNV EGLTIYHVKS 300 HLQKYRTARY KPESSEGTPE KKTTSVTEMP SLDLITTMGI TEALRMQMEV QKQLHEQLEI 360 QRKLQLRIEE QGKYLEMMFE KTKDIGKDLK VSSSSRTDEH PSPSNKMKHT SPND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-29 | 253 | 311 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.25749 | 0.0 | flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g055940.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC205682 | 0.0 | Solanum lycopersicum chromosome 5 clone C05HBa0196G23, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239686.1 | 0.0 | protein PHR1-LIKE 1 | ||||
Refseq | XP_025887060.1 | 0.0 | protein PHR1-LIKE 1 | ||||
TrEMBL | A0A3Q7GN74 | 0.0 | A0A3Q7GN74_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g055940.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4582 | 21 | 39 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 2e-87 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g055940.2.1 |
Entrez Gene | 101257079 |
Publications ? help Back to Top | |||
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