PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g055750.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 460aa    MW: 51645.4 Da    PI: 8.8356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g055750.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-3070127260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgy+WrKYGqK+vkgs+fprsYY+Ct ++C v+kkve +  +++v+ei+Y+g H+h+k
  Solyc05g055750.2.1  70 DDGYTWRKYGQKQVKGSNFPRSYYKCTEPKCLVRKKVESAP-NGHVIEIVYNGAHTHPK 127
                         8***************************************9.***************85 PP
2WRKY103.79.9e-33254311259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+a+d k v++tYeg+Hnhe
  Solyc05g055750.2.1 254 EDGYRWRKYGQKVVKGNPNPRSYYKCTSGGCTVRKHVERAADDFKSVITTYEGKHNHE 311
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-2663127IPR003657WRKY domain
PROSITE profilePS5081121.40264128IPR003657WRKY domain
SuperFamilySSF1182902.35E-2366127IPR003657WRKY domain
SMARTSM007741.1E-3269127IPR003657WRKY domain
PfamPF031065.3E-2470126IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-35238313IPR003657WRKY domain
SuperFamilySSF1182902.35E-28246313IPR003657WRKY domain
PROSITE profilePS5081137.206248313IPR003657WRKY domain
SMARTSM007747.2E-37253312IPR003657WRKY domain
PfamPF031065.7E-25254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDFLTIPPGI SPAALLDSPF MQPTSLTPTK NVGEILNCIE SRKNEEEFSK KQNQQYEQRG  60
IYNSANNSSD DGYTWRKYGQ KQVKGSNFPR SYYKCTEPKC LVRKKVESAP NGHVIEIVYN  120
GAHTHPKTRR KTSDVVAQQN GSSSSSDLLW RNDQYSRDVA AALEPVISDA SDSMLSNNIN  180
NVFESNDISS KLTTFDAENE HLATHFLGDG INQYEFETKR RKKDGYLAEP SSLSRTVREP  240
KVVLQVASEI DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SGGCTVRKHV ERAADDFKSV  300
ITTYEGKHNH EVPSTNKTNG VSGNVRSASM LNNGQQPCTT TSRKSLKDSN TRVQFQDLPI  360
PFERKHFMGS EYLRPSYLGD LSYGATSLQL PDFPLPLPLP SRMSFPARQN ESHFHLNTNF  420
LLPNGASNSF LADGSTQNIH GDNNNSRLVK AKDEIQYWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-3470314878Probable WRKY transcription factor 4
2lex_A3e-3470314878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g055750.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2387890.0Solanum lycopersicum chromosome 5 clone C05HBa0142A20, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069424.10.0probable WRKY transcription factor 26
RefseqXP_019069425.10.0probable WRKY transcription factor 26
TrEMBLA0A3Q7GLD10.0A0A3Q7GLD1_SOLLC; Uncharacterized protein
STRINGSolyc05g055750.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.14e-80WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]