PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g055500.1.1
Common NameLOC101265240
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 363aa    MW: 40783 Da    PI: 7.1839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g055500.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006152174123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++Fs+   L  H  +H
  Solyc05g055500.1.1 152 YECKTCNRTFSSFQALGGHRASH 174
                         99**********99999998887 PP
2zf-C2H214.40.00011247269123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++Cg  F++   L  H+r+H
  Solyc05g055500.1.1 247 HKCSYCGAEFTSGQALGGHMRRH 269
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-12151176IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8151174No hitNo description
SMARTSM003550.063152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.258152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8242269No hitNo description
Gene3DG3DSA:3.30.160.602.5E-4245271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005247269IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-12247271IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.554247274IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEAPQEEVMG GVSKGKRTKR VRPQSLITFM TINNAHSSLT GDTNVDGTVN GEEVNDDDNN  60
NNNDSSPPCT TSGKNFLDDD DVPTEEEEET AKCLILLSQG GHHHHHRRQT PPKKFFDLFN  120
DDMGLYQTKF NSKRYVETTD LGNGAKVGTY VYECKTCNRT FSSFQALGGH RASHKKPKPL  180
TIEPKKHPFF YFSDQDELSP PPATTTPTNY KYNNKLSPTL SPLSSQFNNI NMESSPNYNK  240
SQSPRIHKCS YCGAEFTSGQ ALGGHMRRHR GGANINNTIL CLSPLSIDQE YANYNLKKPR  300
NGLSLDLNLP APQDYQNQSR NLQHPPKYPQ EQAQKQQQEQ QQEQQQTTLV LSTTPQLIDC  360
HY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g055500.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2056813e-08Solanum lycopersicum chromosome 5 clone C05HBa0025A19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321336.10.0zinc finger protein ZAT5-like
TrEMBLA0A3Q7GQL20.0A0A3Q7GQL2_SOLLC; Uncharacterized protein
STRINGSolyc05g055500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-46C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]