PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g055240.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 189aa    MW: 21500.8 Da    PI: 5.5758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g055240.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09346344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT ++d+l+ ++  +++ +   +W +Ia +++ g+t+ ++  ++
  Solyc05g055240.2.1  3 TWTRDDDKLFEHGLVLYPENsadRWQLIADHVP-GKTADDIMAHY 46
                        7********************************.********999 PP
2Myb_DNA-binding41.62.8e-1397141347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Solyc05g055240.2.1  97 PWTEDEHRLFLIGLDKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129411.497154IPR017930Myb domain
SuperFamilySSF466893.45E-11258IPR009057Homeodomain-like
CDDcd001679.77E-9346No hitNo description
Gene3DG3DSA:1.10.10.605.4E-5348IPR009057Homeodomain-like
PfamPF002497.9E-8347IPR001005SANT/Myb domain
PROSITE profilePS5129421.68490146IPR017930Myb domain
SuperFamilySSF466891.38E-1692146IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1793145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.4E-1194140IPR009057Homeodomain-like
SMARTSM007172.3E-1094144IPR001005SANT/Myb domain
CDDcd001672.89E-997142No hitNo description
PfamPF002494.1E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSTWTRDDDK LFEHGLVLYP ENSADRWQLI ADHVPGKTAD DIMAHYDDLV HDVYEIDSGR  60
IDLPSYTDDP VELEGDCQIT SGSNKKSNEI ERKKGTPWTE DEHRLFLIGL DKYGKGDWRS  120
ISRNVVVSRT PTQVASHAQK YFIRQQAMKK ERKRSSIHDI TTAVDTNPVP PQSSFQNQSG  180
SQNFNFAM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.37220.0seed| stem| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Function -- GeneRIF ? help Back to Top
  1. FSM1/FSB1/MYBI complex controls tomato cell expansion, while revealing a mechanism by which competing MYB-MYB interactions could participate in the control of gene expression.
    [PMID: 21707804]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g055240.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2433390.0Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296804.11e-140transcription factor DIVARICATA
RefseqXP_015076073.11e-140transcription factor SRM1-like
SwissprotQ9FNN63e-57SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3Q7HHE11e-139A0A3Q7HHE1_SOLLC; Uncharacterized protein
STRINGSolyc05g055240.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-72MYB family protein
Publications ? help Back to Top
  1. Rose A,Meier I,Wienand U
    The tomato I-box binding factor LeMYBI is a member of a novel class of myb-like proteins.
    Plant J., 1999. 20(6): p. 641-52
    [PMID:10652136]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Machemer K, et al.
    Interplay of MYB factors in differential cell expansion, and consequences for tomato fruit development.
    Plant J., 2011. 68(2): p. 337-50
    [PMID:21707804]
  4. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]