PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g054510.1.1

Common Name

LOC101267120

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 299aa MW: 33706.2 Da PI: 9.6556

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g054510.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.6e-38	78	138	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt GG+lrnvPvGgg+r+n+k+s Solyc05g054510.1.1 78 PDVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTIGGTLRNVPVGGGCRRNNKRS 138 56789****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	62	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAFSSIPFYQ DPPNWHHEQG NHHQQQQHLG ITNENSSELS PTVLPPPGAA PGGGGGPVGS 60 TRSGSITERA RLPKITQPDV ALKCPRCEST NTKFCYFNNY NLSQPRHFCK TCRRYWTIGG 120 TLRNVPVGGG CRRNNKRSSS KRSRKSPIRS ERSRNVPIST SNSTNTITTP SHFPPSSTHL 180 SFFNTPFHNF NNFNSTQNCL NFGEIQPHEG DPTFVDQFRH QQMEKFSFFS PLEQPSNLYP 240 IYSEFRINHH DLENVKVEEN KSSTNSTQGM NLQRNNNLGV NQFWTNYNIS STSTSQLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g054510.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC186290	0.0	Solanum lycopersicum chromosome 5 clone C05HBa0131D04, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321378.1	0.0	dof zinc finger protein DOF3.6
TrEMBL	A0A3Q7GMH2	0.0	A0A3Q7GMH2_SOLLC; Uncharacterized protein
STRING	Solyc05g054510.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	6e-37	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Solyc05g054510.1.1
Entrez Gene	101267120

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]