PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g054400.2.1 | ||||||||
Common Name | LOC101266030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 198aa MW: 21531.6 Da PI: 10.4196 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.5e-19 | 32 | 66 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ Solyc05g054400.2.1 32 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 66 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.2E-14 | 26 | 76 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.492 | 26 | 62 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.52E-12 | 27 | 66 | No hit | No description |
CDD | cd00202 | 3.67E-12 | 31 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.2E-15 | 31 | 65 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 32 | 57 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.2E-17 | 32 | 66 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MVDLSDKQGL GSEEMSSGVT SPETSQSNVK TCADCGTTKT PLWRGGPAGP KSLCNACGIK 60 SRKKRRAFLG LNNEEKKSKK SVVVGHKNIE VQHHLNQSCS SSSNSDDSKS SNFVKNIVSS 120 SLKKKLLPFG KEEVVMQRPR SRSTQKRKLG EVEQAAFLLM ALSCGSFYTH GRMKIDKERK 180 NEKCCTLGSK SSTLWVG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.7607 | 2e-53 | flower| fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g054400.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321383.1 | 1e-142 | GATA transcription factor 15-like isoform X1 | ||||
Refseq | XP_015076166.1 | 1e-142 | GATA transcription factor 15-like isoform X1 | ||||
TrEMBL | A0A3Q7GKJ2 | 1e-141 | A0A3Q7GKJ2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g054400.2.1 | 1e-142 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-30 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g054400.2.1 |
Entrez Gene | 101266030 |
Publications ? help Back to Top | |||
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