PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g054170.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 334aa MW: 37053.5 Da PI: 4.7118 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 118.2 | 1.1e-36 | 198 | 318 | 10 | 133 |
GRAS 10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + vs+ d ++ +al++ l++ +s +g+pmqRl ay++e+L+ar+++s+s++yk l+++e + se +++++++++++P+++f++ aN Solyc05g054170.2.1 198 QKVSDADVTARDALMNVLEQKVSVSGEPMQRLSAYMLEGLKARIYSSGSNIYKMLKCKEPT---GSELISYMQVLYHICPYYRFAYTSANV 285 5688899999999***********************************************9...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa 133 I ea+ +e+r+HiiDf+i qG QW+ L+q L Solyc05g054170.2.1 286 VIEEAMRNESRIHIIDFQIAQGSQWVFLMQNLV 318 ******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.737 | 144 | 333 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-34 | 198 | 318 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MRASQIPQSS GGVHKLCHQP TANFEQYYSP YHVVNNNSSD TSSSGTQLSY QTQNDKFFTL 60 DSLPDAGYVS YDSPPAVSVS SNWSPFSPQC SQSYISDQHH SSDNTYGSPL SGCSVINDGN 120 ELKHVLREMA NNLLGPGFDI DEDSSCSFNG EVSKPSKWNR VLEIAPSLDM KELLLACAEA 180 ISDVEVTARD AQMNVLEQKV SDADVTARDA LMNVLEQKVS VSGEPMQRLS AYMLEGLKAR 240 IYSSGSNIYK MLKCKEPTGS ELISYMQVLY HICPYYRFAY TSANVVIEEA MRNESRIHII 300 DFQIAQGSQW VFLMQNLVLM IPNQLMHAVV DFT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.15408 | 0.0 | callus| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g054170.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189287 | 0.0 | Solanum lycopersicum chromosome 5 clone C05HBa0166A02, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239819.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_004239821.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_010321394.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_019069407.1 | 0.0 | scarecrow-like protein 13 | ||||
TrEMBL | A0A3Q7GMC0 | 0.0 | A0A3Q7GMC0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g054170.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA28134 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 3e-79 | SCARECROW-like 13 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g054170.2.1 |
Publications ? help Back to Top | |||
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