PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g053500.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 246aa    MW: 27875.1 Da    PI: 7.7809
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g053500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.8e-20179212134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +
  Solyc05g053500.2.1 179 CQHCGVDKTPQWRAGPTGPKTLCNACGVRYKSGR 212
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16173223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.387173209IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-16175236No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15176210IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.43E-15178227No hitNo description
PfamPF003201.0E-17179212IPR000679Zinc finger, GATA-type
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
METMYSKTCF MVDDDILNFS LDDDEEKYQT SSSSFESSNT LGFRQDDHNP SFPDYVEEEL  60
EWLSNKDAFP AVEFDLFSDH VIFDHHSPNS VLENNNNNCN VNLKDNAFTS HASSLLQVPM  120
NHPVGTRSKR RRRIALQCDN SCVWGNQVKF NNTSTKQGLT LLKISMAKAK RGTSIGRTCQ  180
HCGVDKTPQW RAGPTGPKTL CNACGVRYKS GRLFPEYRPA NSPTFSVELH SNSHRKVLEM  240
RKQRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133KRRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.64520.0cell culture| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g053500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239871.10.0GATA transcription factor 1
TrEMBLA0A3Q7GM020.0A0A3Q7GM02_SOLLC; Uncharacterized protein
STRINGSolyc05g053500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-43GATA transcription factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]