PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g053380.2.1
Common NameLOC101264826
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 296aa    MW: 33384.1 Da    PI: 7.8285
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g053380.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-33153211159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg H+h+
  Solyc05g053380.2.1 153 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTSSCGVKKRVERSIQDTSIVITTYEGVHTHP 211
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33138213IPR003657WRKY domain
SuperFamilySSF1182905.36E-29145213IPR003657WRKY domain
PROSITE profilePS5081130.538148213IPR003657WRKY domain
SMARTSM007741.5E-38153212IPR003657WRKY domain
PfamPF031062.7E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEKENNVRTE ITNTSNWSSN AMFDIEKDYS LSFLLETMFG VDEHRNYCYD NTTTSSIFDL  60
LMIPSHQQQL QPQRFITCSS LPESSSILLS DHLINNVPVT PNSSSISSSS TELAANDDHQ  120
HKYKKQLKPN KKKQKGEKEP RFAFMTKSEI DHLDDGFRWR KYGQKAVKNS PFPRSYYRCT  180
TSSCGVKKRV ERSIQDTSIV ITTYEGVHTH PCPITPRGWV GVQPVTTTYG GRVGGGDGGG  240
RCCHYGDYSS SLFSTNNSLQ EKRFWSSSNS SLAKDDHGLL QDMVSSRMRS DLIEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27143213777Probable WRKY transcription factor 4
2lex_A3e-27143213777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235GGRVGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.227710.0callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g053380.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352739.10.0probable WRKY transcription factor 48
SwissprotO229001e-47WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A3Q7GN720.0A0A3Q7GN72_SOLLC; Uncharacterized protein
STRINGSolyc05g053380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.16e-45WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]