PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g053150.1.1
Common NameLOC101248880
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 230aa    MW: 27331.1 Da    PI: 9.4921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g053150.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd+ll+d+v+++G g+W+ +ar  g++R +k+c++rw +yl
  Solyc05g053150.1.1 13 KGPWTVEEDKLLIDYVNLHGEGRWNCVARLAGLKRNGKSCRLRWVNYL 60
                        79********************************************97 PP
2Myb_DNA-binding48.81.6e-1566110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w+++
  Solyc05g053150.1.1  66 RGQITPYEERIILELHAIWGNR-WSTIARNLP-GRTDNEIKNYWRTH 110
                         6788999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.308860IPR017930Myb domain
SuperFamilySSF466896.47E-3011107IPR009057Homeodomain-like
SMARTSM007178.6E-151262IPR001005SANT/Myb domain
PfamPF002491.3E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-231467IPR009057Homeodomain-like
CDDcd001675.09E-101560No hitNo description
PROSITE profilePS5129424.93161115IPR017930Myb domain
SMARTSM007175.3E-1465113IPR001005SANT/Myb domain
PfamPF002493.1E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2468116IPR009057Homeodomain-like
CDDcd001673.16E-970111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MRRWGIIEEE WRKGPWTVEE DKLLIDYVNL HGEGRWNCVA RLAGLKRNGK SCRLRWVNYL  60
RPDLKRGQIT PYEERIILEL HAIWGNRWST IARNLPGRTD NEIKNYWRTH FKKKVKKTST  120
DNSEKTKRIC LLKRHQFQQQ QLSNSQIDLK RMMLLFEENE NKVVSHVPKQ DMTILYHNNT  180
FHEQDQQGGL FGSMINGYAN YVQVPEASSN EDIMWDIGLW NLDDYNVNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27131157108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g053150.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4261743e-07Lycopersicon esculentum blind mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240221.11e-171transcription factor MYB24-like
SwissprotQ10MB41e-52MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A3Q7GLT81e-170A0A3Q7GLT8_SOLLC; Uncharacterized protein
STRINGSolyc05g053150.1.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-77myb domain protein 305
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]