PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g053090.1.1 | ||||||||
Common Name | LOC101246721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 744aa MW: 83807.1 Da PI: 6.4174 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 382.4 | 5.5e-117 | 370 | 740 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+av+ g+++ a++lL++++e +sp gd mqRla+yf+ +L+ar+a+s++++ykal +++ s +++l+a++l+ ++P+ Solyc05g053090.1.1 370 LRTLLTLCAQAVAVGNQRTANELLKKIRESSSPMGDGMQRLAHYFADGLEARMAGSGTHIYKALITRPVS---AADVLKAYHLLLAACPFR 457 5789***************************************************************999...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 ++s + N++I++ +e++++vHiiD++i+ G+QWp L+q LasRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfefn+ Solyc05g053090.1.1 458 TMSSFFSNKTIMNLAEKASTVHIIDIGIMWGFQWPGLIQRLASRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLANYAESFKVPFEFNA 548 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e+++le+L++++gE+l+Vn+ ++ +llde+v ++s+rd +L+l+++l+P+v+++ + +n++ F rf eal +ys+lfd+l Solyc05g053090.1.1 549 -IAQKWETVKLEDLKINKGEVLVVNCLYRFRNLLDETVVVNSPRDVFLNLIRRLNPDVFILGTVNGGYNAPFFISRFREALFHYSSLFDML 638 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+ +pre +er+ vE+ ++g+e++n++acegaer+er et+++W+ r+ +aGF+++pl+e+++ + ++++ + ++ +s++l++gW Solyc05g053090.1.1 639 ETIIPREVHERMLVEKNIIGQEAMNAIACEGAERIERPETYKQWQVRILKAGFRQLPLDEEIMRMTTERFKVYDKN-FIIDVDSEWLLQGW 728 ********************************************************************99999955.************** PP GRAS 363 kdrpLvsvSaWr 374 k+r ++S+W+ Solyc05g053090.1.1 729 KGRIASALSMWK 740 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.97 | 344 | 721 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-114 | 370 | 740 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MGQYHEAGSA VKLEDEDCSF FADPNLINNL RVNDYFHDDY DPNLINNLRV SDNLVNISSP 60 FQSDVERNAL VPLTADDFHE DYDFSDGVLK YINQMLMEED IEEKTCMFQE SAALQAAERS 120 FYEVIGEKYP SSTNHEKSST LGQIERYAMG HCSGNDGRDG LLGPNWILDL GEDDVSHVPD 180 DVALDSTSRS SNSLSGTVPD VPVDSPVSTL RIPDIFSGGE SVMQFKKGVE EASKFLPTGN 240 SLLADVRYHV VGKELRYKER KDAVVKVDKY GEKRYTERSR GKKNTFHEDI VDLTEGRNNK 300 QSAVFSESTV RSEMFDRVLL CSAGKNESAL REALQAISRQ NASKNGPSKG SNGKKLQRKK 360 KGGKRDVVDL RTLLTLCAQA VAVGNQRTAN ELLKKIRESS SPMGDGMQRL AHYFADGLEA 420 RMAGSGTHIY KALITRPVSA ADVLKAYHLL LAACPFRTMS SFFSNKTIMN LAEKASTVHI 480 IDIGIMWGFQ WPGLIQRLAS RPGGPPKLRI TGIDFPNPGF RPAERVEETG RRLANYAESF 540 KVPFEFNAIA QKWETVKLED LKINKGEVLV VNCLYRFRNL LDETVVVNSP RDVFLNLIRR 600 LNPDVFILGT VNGGYNAPFF ISRFREALFH YSSLFDMLET IIPREVHERM LVEKNIIGQE 660 AMNAIACEGA ERIERPETYK QWQVRILKAG FRQLPLDEEI MRMTTERFKV YDKNFIIDVD 720 SEWLLQGWKG RIASALSMWK AAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-52 | 377 | 739 | 26 | 378 | Protein SCARECROW |
5b3h_A | 4e-52 | 377 | 739 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-52 | 377 | 739 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g053090.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014276 | 0.0 | Lycopersicon esculentum clone 133506R, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239904.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_010321430.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A3Q7GJU1 | 0.0 | A0A3Q7GJU1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g053090.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g053090.1.1 |
Entrez Gene | 101246721 |
Publications ? help Back to Top | |||
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