PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g052850.2.1
Common NameLOC101252587
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 375aa    MW: 40620.8 Da    PI: 7.2597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g052850.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-164792147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        + +W++eEd  l ++v+++G ++W+ Ia+ +  gR++k+c++rw + 
  Solyc05g052850.2.1 47 KEPWSPEEDAVLTELVNKFGARNWSMIAQGIA-GRSGKSCRLRWCNQ 92
                        679*****************************.***********985 PP
2Myb_DNA-binding54.43e-1799143147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T eEd ++++a+  +G++ W++Ia+ ++ gRt++ +k++w++ 
  Solyc05g052850.2.1  99 RKPFTDEEDHIIINAHGVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 143
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.964293IPR017930Myb domain
SuperFamilySSF466898.27E-3144140IPR009057Homeodomain-like
SMARTSM007178.9E-144695IPR001005SANT/Myb domain
PfamPF002491.2E-144792IPR001005SANT/Myb domain
CDDcd001671.07E-134991No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2649100IPR009057Homeodomain-like
PROSITE profilePS5129425.15694148IPR017930Myb domain
SMARTSM007174.9E-1598146IPR001005SANT/Myb domain
PfamPF002493.3E-1599143IPR001005SANT/Myb domain
CDDcd001672.68E-11101144No hitNo description
Gene3DG3DSA:1.10.10.601.4E-23101147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNEKAEQNGY AAAGEGHGGD GGCSLVDAGD AMLNGGRGSR VSSGRVKEPW SPEEDAVLTE  60
LVNKFGARNW SMIAQGIAGR SGKSCRLRWC NQLDPVLKRK PFTDEEDHII INAHGVHGNK  120
WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG VWRVKPIRSM MLDDSSIYKA RALSEETMSC  180
EGVNQTKPLE MLEVSRTECI PSQSENKAQI YEMCCIPEET PHFTSERSRP TSIGNSDPPA  240
LHPTQKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC  300
AATSKSSSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS  360
QRNSQRSSAQ VGFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-39461476107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.168470.0fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g052850.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239924.10.0transcription factor MYB1
TrEMBLA0A3Q7HG280.0A0A3Q7HG28_SOLLC; Uncharacterized protein
STRINGSolyc05g052850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-89myb domain protein 109
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]