PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g052610.2.1

Common Name

LOC101257376

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 244aa MW: 28526.1 Da PI: 7.5919

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g052610.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3.1e-13	123	167	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Solyc05g052610.2.1 123 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 167 8***************************789*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.245	21	75	IPR017884	SANT domain
SMART	SM00717	1.0E-8	22	74	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.44E-11	24	79	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-5	25	68	IPR001005	SANT/Myb domain
CDD	cd00167	1.19E-6	25	72	No hit	No description
PROSITE profile	PS51294	20.218	116	172	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-16	118	171	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-18	119	171	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.5E-12	120	167	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-11	120	170	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-11	123	167	IPR001005	SANT/Myb domain
CDD	cd00167	8.33E-9	123	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
METLYPTCFV PNSNWIMQQS KSNTEWTKEE NKRFESALAI YDETTPNRWF KVAEIIPGKS 60 VLDVIMQYKE LVADVSNIEA GLLPNTRRGY TSSFALEFVD HRNIQTFNKR GKSYDHERKK 120 GVPWTEEEHR RFLMGLEKYG KGDWRNISRN FVISKTPTQV ASHAQKYYLR QLSREKERKR 180 PSIHDITTVH LTNDEFLNNN NNDDKKSMCE ERLYMSSTST TDLLIGCWNN SIDEDLMAFG 240 QFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15229	0.0	callus\| flower\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g052610.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY423549	0.0	Lycopersicon esculentum coronatine-insensitive 1 (Coi1) gene, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239940.1	0.0	transcription factor DIVARICATA
Refseq	XP_004239941.1	0.0	transcription factor DIVARICATA
Refseq	XP_025887035.1	0.0	transcription factor DIVARICATA
Swissprot	Q8S9H7	3e-79	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A3Q7GP04	0.0	A0A3Q7GP04_SOLLC; Uncharacterized protein
STRING	Solyc05g052610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140
Representative plant	OGRP275	17	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	5e-77	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc05g052610.2.1
Entrez Gene	101257376

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]