PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g052040.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 366aa MW: 41514.7 Da PI: 9.3677 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 210 | 260 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+ta +Aa a+++a+ +l+g Solyc05g052040.1.1 210 RYRGVRQRP-WGKFAAEIRDPTRK--GTRVWLGTFDTAMDAAMAYDRAAFRLRG 260 8********.**********8542..4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.19E-32 | 209 | 268 | No hit | No description |
PROSITE profile | PS51032 | 24.105 | 210 | 268 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-38 | 210 | 274 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 210 | 269 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-23 | 210 | 270 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-12 | 210 | 260 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 211 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 250 | 270 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDKPHKWLPC SNQEGPKKPP LKLKFSTLYN LHFHSSFSTQ FNYQQYFSRK KMDSSSLEMI 60 RQHLLDDVVF METCSSSSSS SLETTSSTLY SQTSSNSESL ESLTSEIKLE SNFSVYPDFI 120 NTPQSSNLES VSRFFDNSTI EFQAKPQKKR SFNDRKPSLN ISIPSVKKTE EPKTGEVKTG 180 EPKTEEPKTG EVKTEYSVKE KMVENSEKKR YRGVRQRPWG KFAAEIRDPT RKGTRVWLGT 240 FDTAMDAAMA YDRAAFRLRG SKAILNFPLE VSNFKQENHE IEKNVVNLNS NTNSCGKRVR 300 GEMENDDGIV MKKEVKREQM VATPLTPSNW SSIWDCGNGK GIFEVPPLSP LSPHSNFGYS 360 QLLVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-33 | 209 | 271 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.274 | 0.0 | callus| flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g052040.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF204784 | 0.0 | Lycopersicon esculentum ripening regulated protein DDTFR10/A (DDTFR10/A) mRNA, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306589.1 | 0.0 | ripening regulated protein DDTFR10/A | ||||
Swissprot | Q40478 | 1e-84 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A3Q7GLA6 | 0.0 | A0A3Q7GLA6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g052040.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 4e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g052040.1.1 |
Publications ? help Back to Top | |||
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