PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g051830.2.1
Common NameLOC101249083
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 390aa    MW: 44560 Da    PI: 5.9122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g051830.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.3e-251058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        +ie+ +nrqvtfskRrngilKK +ELSvLCd++v +i+fs++g+l  ys
  Solyc05g051830.2.1 10 KIESLTNRQVTFSKRRNGILKKVYELSVLCDVDVGIIMFSPSGRLTHYS 58
                        59********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.506161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-25291IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-22323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KVYELSVLCD VDVGIIMFSP SGRLTHYSRK  60
RRIEDILSEL ISLPDSERGF YINNKESVLW NLRKIEIEDK FCDIERINPA YVNANDTTKK  120
IQDEINGLHC KLDEAEGLLR IFEPDTQRIT SLHELDLCEK RLQVALNQVR QRMEQLSSNN  180
TPSYEDNMAQ INELLQHIDN TQVHEKPPYD LWLELEDYNH ENNNINSPLY TASETSSISQ  240
SSMNLPSSTT YDTMSQTSLS GETYQNNNNF KQSQHSTRTL PNLTLQTSFK FAKPEMSQTS  300
IEGSFSCLTD ENLKKSICSN RVFPAITPLQ TSFSFAKAEM ETPTSALRPL APYLQAEATT  360
SSCTNQEGNN EMSWFQPKVK KSKQYHSID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376383PKVKKSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g051830.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0025492e-09Solanum lycopersicum cultivar Marglob mismatch repair protein (msh2) mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239996.10.0agamous-like MADS-box protein AGL104
TrEMBLA0A3Q7GJ020.0A0A3Q7GJ02_SOLLC; Uncharacterized protein
STRINGSolyc05g051830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130701416
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-46AGAMOUS-like 104
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]