PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050340.2.1
Common NameLOC101250802
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 328aa    MW: 36725 Da    PI: 6.0602
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050340.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.46.9e-24129185258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dg +WrKYGqK++ gs++pr YYrC+ + C ++k v+r ++ p ++eitY g+H +
  Solyc05g050340.2.1 129 EDGLSWRKYGQKVISGSKYPREYYRCARRCCGATKMVQRIETGPLTFEITYGGSHSC 185
                         7******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-24116187IPR003657WRKY domain
PROSITE profilePS5081119.52123184IPR003657WRKY domain
SuperFamilySSF1182901.83E-22126187IPR003657WRKY domain
SMARTSM007742.2E-27128187IPR003657WRKY domain
PfamPF031065.1E-22129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGENSCWERE VVITELTKGK ELMLQLQKHF DPMKQGVCQY LAAEILSSYD KAMSLLNGTA  60
LSGMMMSKGK EIIHSTPSSS TAPQLESPHL LADSSTKSCH RPSNYRKRKM LERRKEYVEA  120
RPGEEVPPED GLSWRKYGQK VISGSKYPRE YYRCARRCCG ATKMVQRIET GPLTFEITYG  180
GSHSCGQETK NQDEELLAVQ QTKCDEVERG AGEIFESYIH KMVSTPNNSY NNSSTGVVFS  240
NSNSLFNIPT PTSSPHPDTD FLLDDNNLAL LFDHDVPENS GNDSLAALAG EVYKLYEENN  300
KLNFPHRYDK QAEAENSRPL NNVGDRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-121291831872Probable WRKY transcription factor 4
2lex_A2e-121291831872Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.102291e-156flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43812451e-156
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050340.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772871.10.0probable WRKY transcription factor 41
TrEMBLA0A3Q7GLM10.0A0A3Q7GLM1_SOLLC; Uncharacterized protein
STRINGSolyc05g050340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-27WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]