PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g050300.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 196aa MW: 22572.9 Da PI: 6.509

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g050300.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	61	2.1e-19	27	81	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYG+K v++ + YYrC+ + C ++k v+r++++ ++e+tY g+Hn++ Solyc05g050300.1.1 27 EDGFSWRKYGKKLVQNIP---EYYRCARHYCGATKMVQRTETESLTFEVTYGGSHNCD 81 7***********9876...7********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-20	16	82	IPR003657	WRKY domain
PROSITE profile	PS50811	15.262	21	83	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-18	24	82	IPR003657	WRKY domain
SMART	SM00774	1.8E-21	26	82	IPR003657	WRKY domain
Pfam	PF03106	6.1E-18	27	81	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MINHYRKKLA RRTEFVEARP GEEVPPEDGF SWRKYGKKLV QNIPEYYRCA RHYCGATKMV 60 QRTETESLTF EVTYGGSHNC DQAENNNQNE QLVFVVQTHV RRTTGELSEF YIHETPNNSH 120 NNLFSNSNSV FNMNNSVFVP TPTSSTHPVD NNSRTDLLFV HDVPENTRST YESSANDLDS 180 PGYMLKKFLS FDYLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g050300.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345568.1	2e-79	PREDICTED: probable WRKY transcription factor 41
TrEMBL	A0A3Q7GI67	1e-126	A0A3Q7GI67_SOLLC; Uncharacterized protein
STRING	Solyc05g050300.1.1	1e-145	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA28099	2	2
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	4e-16	WRKY family protein

Link Out ? help Back to Top
Phytozome	Solyc05g050300.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]