PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g050060.1.1 | ||||||||
Common Name | LOC104647595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 36764.6 Da PI: 9.6351 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.4 | 6.8e-29 | 162 | 220 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ + Y+g+Hnh+ Solyc05g050060.1.1 162 NDKWAWRKYGQKYIKGSPFPRNYYKCSTSkHCEAKKQIEKSSKDENIFFVSYSGNHNHD 220 8*************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-28 | 154 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.458 | 156 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 156 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-29 | 161 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-22 | 162 | 220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEDDHRDIGE IARSCNMNKP NNVVAPKLGL KASHVWNYFD RVLTPGMNSF NGSSESVLLD 60 FPIARQERSY DQLNNQQFYL HSIQPVQFFQ QIVVPQSRTT VACVPPTTTQ PEWIDLQQQL 120 DIGAKVHPNF ASSMKIPLTQ STTRKNQSIR PTYELSEEEL INDKWAWRKY GQKYIKGSPF 180 PRNYYKCSTS KHCEAKKQIE KSSKDENIFF VSYSGNHNHD PPISRRYLSS FKNNSKFKLP 240 KSINIFPKES IFNASSSSSK RIKHSTDVAS SIIGTKPPLE IGSKNKMLFA VMQNKGDSKE 300 TIHMNEDIFM GIEELQIGTT ST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 159 | 222 | 12 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g050060.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU457449 | 5e-13 | S.lycopersicum DNA sequence from clone SL_MboI-63I3 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321524.1 | 0.0 | probable WRKY transcription factor 4 | ||||
TrEMBL | K4C138 | 0.0 | K4C138_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g050060.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 3e-29 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g050060.1.1 |
Entrez Gene | 104647595 |
Publications ? help Back to Top | |||
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