PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050050.1.1
Common NameLOC101247027
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 323aa    MW: 36751.4 Da    PI: 9.6938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050050.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27162220259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+++WrKYGqK++kgs+fpr+YY+C+++ +C++kk++e+s++d++++ +  +g+Hnh+
  Solyc05g050050.1.1 162 NDKWAWRKYGQKNIKGSPFPRNYYKCSTSkQCEAKKQIEKSSKDENIFFVSCSGDHNHD 220
                         8*************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-27154222IPR003657WRKY domain
SuperFamilySSF1182903.4E-23156222IPR003657WRKY domain
PROSITE profilePS5081128.885156222IPR003657WRKY domain
SMARTSM007741.0E-27161221IPR003657WRKY domain
PfamPF031062.9E-22162220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEDDHWDIGE IERSCNMNKP NNVVAPKLGL KASHVWNYFD RVLAPGMNSF NGSSESVSLD  60
FSIARQDRSY DQVSNQQFYL HSIQPVQFFQ QIVVPQSRTT VSCVPPTTTQ QEWIDLQQQL  120
DIGAKIHPNF ASSMKSPLTQ STTRKNQSIR LTYELSQEEL TNDKWAWRKY GQKNIKGSPF  180
PRNYYKCSTS KQCEAKKQIE KSSKDENIFF VSCSGDHNHD PPMSRRYLAS FKNNSKFKIS  240
KSINIFPKES IFNASSSSSK RIKHSTNVAS SIIGTKPPLE IGSKNKMFFA VVQNKGDGKE  300
KVHMNEDIFM GIEEHQIRTT ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-171592221274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050050.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4574495e-13S.lycopersicum DNA sequence from clone SL_MboI-63I3 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240275.10.0WRKY transcription factor 22-like
TrEMBLK4C1370.0K4C137_SOLLC; Uncharacterized protein
STRINGSolyc05g050050.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-29WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]