PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g050040.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 279aa MW: 31441.6 Da PI: 9.7873

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g050040.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	82.8	3.4e-26	141	199	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++W KYGqK +kgs+fpr+YY+C+++ +C++kk++e+s++d++++ + +geHnh+ Solyc05g050040.1.1 141 NDKWAWSKYGQKYIKGSPFPRNYYKCSTSkQCEAKKQIEKSSKDENIFFVSCSGEHNHD 199 8***********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-25	133	201	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-22	135	201	IPR003657	WRKY domain
PROSITE profile	PS50811	28.311	135	201	IPR003657	WRKY domain
SMART	SM00774	4.1E-25	140	200	IPR003657	WRKY domain
Pfam	PF03106	6.5E-21	141	199	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEDDHRDIGA IARSCNMNKP NNVVAPKLGL KASHVWNYFD RVLAPGMNSF NGSSKSVSLD 60 FPIARQERSY DQVSNQQFYL HSIEPVQFFQ QIIVPQSRTA VACVPPTTTQ PERIDLQQQL 120 DIGKNQSIRL TYELSQEELT NDKWAWSKYG QKYIKGSPFP RNYYKCSTSK QCEAKKQIEK 180 SSKDENIFFV SCSGEHNHDP PMSRRYLASF KNNSKFKIPK SINIFPKESI FNASSSSSKC 240 IKHSTDVASS IIGTKPPLEI GSKNKMLFAV VQNKGDGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-16	138	201	12	74	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g050040.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU457449	4e-13	S.lycopersicum DNA sequence from clone SL_MboI-63I3 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886744.1	0.0	disease resistance protein RRS1-like
TrEMBL	K4C137	0.0	K4C137_SOLLC; Uncharacterized protein
STRING	Solyc05g050040.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3668	13	45
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-28	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Solyc05g050040.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]