PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g046040.1.1 | ||||||||
Common Name | LOC101255001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CO-like | ||||||||
Protein Properties | Length: 420aa MW: 46262.6 Da PI: 4.7276 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23 | 1.6e-07 | 3 | 42 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C++++e ++ +C++++ lC +C ++ H+ H Solyc05g046040.1.1 3 PLCDLCGEVRAVVYCKSDSARLCLQCDDYVHSPnlisrrH 42 68******99*******************99425555555 PP | |||||||
2 | zf-B_box | 17 | 1.2e-05 | 45 | 72 | 3 | 30 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCl 30 +C+++++++ + C d lCe C Solyc05g046040.1.1 45 SFICDKCNSQPSIVRCMDEAISLCERCD 72 679************************7 PP | |||||||
3 | CCT | 62.9 | 9.8e-22 | 363 | 406 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RY+eK+ktR F K+irY+sRKa+A++R RvKGrFvk+ Solyc05g046040.1.1 363 RHEAKMRYNEKKKTRTFGKQIRYASRKARADTRRRVKGRFVKAG 406 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.072 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.40E-7 | 3 | 47 | No hit | No description |
Pfam | PF06203 | 1.1E-16 | 363 | 405 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.624 | 363 | 405 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDPLCDLCGE VRAVVYCKSD SARLCLQCDD YVHSPNLISR RHSRSFICDK CNSQPSIVRC 60 MDEAISLCER CDWDGNGCIG TGHRLKKLNP YTGCPSPDEF TKMLSQVLEM PIGTDTNFGS 120 FGNSLGSSLS INENNSSLEN KVNEDSFVSS KLLASNYKFE AWSIPPEPNY LNSYQIDLAP 180 FSEGSGLSKQ DCPIKDLGLQ EGDDLSKGVD FDDVTLDFNC SYEILPDSRQ TGFSDENKEL 240 DCLVMEKNSS VTGSNNVETS HEATSSVQQE YMGLQSSQIS AAASSTNLLQ TMSANANCML 300 MNSTCNGSIG ALPFLPAPIH PSMSLSLSNI TGESCAEQDC GLSPGFLNEA PWDLSLENCP 360 QKRHEAKMRY NEKKKTRTFG KQIRYASRKA RADTRRRVKG RFVKAGEAYD YDPSETRDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g046040.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232701 | 0.0 | Solanum lycopersicum chromosome 05 clone C05HBa0031K11, complete sequence | |||
GenBank | AC247293 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 5 clone slm-48a1 map 5, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886990.1 | 0.0 | zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
Refseq | XP_025886991.1 | 0.0 | zinc finger protein CONSTANS-LIKE 12-like isoform X1 | ||||
TrEMBL | A0A3Q7GKX9 | 0.0 | A0A3Q7GKX9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g046040.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4231 | 17 | 26 | Representative plant | OGRP1375 | 13 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21880.1 | 2e-91 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g046040.1.1 |
Entrez Gene | 101255001 |
Publications ? help Back to Top | |||
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