PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g045800.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 28485.2 Da PI: 9.5319 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83 | 2.9e-26 | 123 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK +kg +fpr+YY+C+++ +C++kk++e+s++d++++ + +geHnh+ Solyc05g045800.1.1 123 NDKWAWRKYGQKYIKGFTFPRNYYKCSTSkQCEAKKQIEKSSKDENIFLVSCSGEHNHD 181 8*************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-26 | 113 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-23 | 116 | 183 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.795 | 117 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-25 | 122 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-21 | 123 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MRDDNRDIGV VARSFNINKP NNVIAPKLGL NASHFWNYFD RPLAPCMNSF TGSSEIVSLD 60 LPITLQERSY DQVIITNQNS NQQLYLHSIT PFQFIQQITV PQSRTTVECA PPTTTQSQEE 120 LTNDKWAWRK YGQKYIKGFT FPRNYYKCST SKQCEAKKQI EKSSKDENIF LVSCSGEHNH 180 DPPMSRRYLV SCNNNSKLKL PKGINISPKE SIFNASSSSS KRVKHSTDVA SPIIGTKPPL 240 EIGSKKNGCC GLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-16 | 115 | 183 | 7 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g045800.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010321551.1 | 1e-151 | probable WRKY transcription factor 27 | ||||
TrEMBL | K4C0R3 | 0.0 | K4C0R3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g045800.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 2e-25 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g045800.1.1 |
Publications ? help Back to Top | |||
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