PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g045710.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 239aa    MW: 26992.8 Da    PI: 9.1447
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g045710.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.31.2e-2685143259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+++WrKYGqK +kgs+fpr+YY+C ++ +C++kk++e+s++d++++ +   geHnh+
  Solyc05g045710.1.1  85 NDKWAWRKYGQKYIKGSPFPRNYYKCDTSkHCEAKKQIEKSSKDENIFLVSCFGEHNHD 143
                         8*************************6655****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-2673145IPR003657WRKY domain
PROSITE profilePS5081129.0879145IPR003657WRKY domain
SuperFamilySSF1182901.83E-2380145IPR003657WRKY domain
SMARTSM007741.4E-2584144IPR003657WRKY domain
PfamPF031061.7E-2185143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGDDNRDIGV IARSCNINKP NNVVGPKLGL NMSHVWNYFD KPLSPCMSSF TSLSEIVSLD  60
FPIARQERSY DKMLTYESSQ EELTNDKWAW RKYGQKYIKG SPFPRNYYKC DTSKHCEAKK  120
QIEKSSKDEN IFLVSCFGEH NHDPPMSRRY LASCNNNSKF KLLKGINISP KESMFNASSS  180
SSKRVKHSTD VASPIIGTKP PLKIGSKNKM VVAVVHNIRD GEEKVDMNED IIMGIDQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-1772145274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g045710.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4574498e-11S.lycopersicum DNA sequence from clone SL_MboI-63I3 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069556.21e-171probable WRKY transcription factor 27
TrEMBLA0A3Q7GM531e-119A0A3Q7GM53_SOLLC; Uncharacterized protein
STRINGSolyc05g045710.1.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-28WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]