PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g032780.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 213aa MW: 24417.8 Da PI: 5.0558 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.6 | 2e-25 | 90 | 187 | 1 | 91 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+k rhs ++T++g++dRRvRls ++a++f+d+qd+LG+d++ k+i+ L+++ak i++l + +++ +s ++++ + s ++++s+ Solyc05g032780.1.1 90 ATGRKYRHSNVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPCKAIDSLIKEAKVTIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 180 589***********************************************************99944444333455555555555554434 PP TCP 89 ....kaa 91 + Solyc05g032780.1.1 181 sqenRGV 187 3222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-23 | 91 | 185 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.611 | 93 | 151 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MNHQCQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSVCENP EKWANFTVSG 60 QELNKGTRRL KPKRAKTDVI EGHGGRIIRA TGRKYRHSNV STAKGPKDRR VRLSPNTAIQ 120 FYDVQDRLGY DRPCKAIDSL IKEAKVTIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF 180 SQENRGVPNS ECGVQDKQQE VNYDIPNMFS LY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-17 | 98 | 151 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-17 | 98 | 151 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g032780.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243474 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-56p20 map 1, complete sequence | |||
GenBank | AC246078 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12e23 map 1, complete sequence | |||
GenBank | AC246581 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67d8 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069120.1 | 1e-132 | transcription factor TCP10-like | ||||
TrEMBL | A0A3Q7GIV4 | 1e-158 | A0A3Q7GIV4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g032780.1.1 | 1e-159 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g032780.1.1 |
Publications ? help Back to Top | |||
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