PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g020020.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 411aa    MW: 44521.5 Da    PI: 5.4872
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g020020.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box193e-06141539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ ++e++ + +C+++  +lC +C  + H+       H++
  Solyc05g020020.2.1  1 MCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 41
                        5*****************************65677777765 PP
2CCT63.18.6e-22353396144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Solyc05g020020.2.1 353 RSDAVLRYKEKKKTRKFDKHVRYASRKARADVRRRVKGRFVKAG 396
                         889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-8144IPR000315B-box-type zinc finger
PROSITE profilePS5011910.182144IPR000315B-box-type zinc finger
CDDcd000211.31E-7144No hitNo description
PfamPF062032.8E-16353395IPR010402CCT domain
PROSITE profilePS5101715.011353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MCEFCGEQRS IVYCRSDAAC LCLSCDRNVH SANALSQRHS RTLLCERCNS QPAIVRRVEE  60
KVSLCKNCDS IGHAGSGTGS VHNRQALSSY TGCPSAAELS TIWSFLLDNS LGGDSTCEKG  120
MGSMSITDNR LTDSRAPQGK FNSQDASATV EVSEIHTPGK SSILVGSSMP NLGSKLNKVE  180
HIAGSVNISS SKDCYSGVKA STIYEDDPFS QDFNMDEVDL SFENYEELFS GSLDNPNQLF  240
ENDDIDGLFG TKDMSVSDSS CQDANAVEGS SIRTVMSILP ACSKAESADS LMSCKTEPTV  300
CFARQASILS FSNLGGESNG GDYQECGAST MLLMGEPPWC HPCPESSLAS SSRSDAVLRY  360
KEKKKTRKFD KHVRYASRKA RADVRRRVKG RFVKAGDAYD YDPLNETRSF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.11760.0callus| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g020020.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239294.10.0zinc finger protein CONSTANS-LIKE 10
RefseqXP_010321090.10.0zinc finger protein CONSTANS-LIKE 10
RefseqXP_010321091.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA91e-124COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM1A3340.0M1A334_SOLTU; B-box zinc finger protein 13
STRINGSolyc05g020020.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-111B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]