PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g015840.2.1
Common NameLOC101251286
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 313aa    MW: 34287.9 Da    PI: 8.1144
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g015840.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.18.1e-412096278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                        C v+gC+adlse++eyhrrhkvCevhsk+++v+++g+ qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+
  Solyc05g015840.2.1 20 CLVDGCNADLSECREYHRRHKVCEVHSKTAKVTIAGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQP 96
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-321481IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7011794IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-381899IPR004333Transcription factor, SBP-box
PfamPF031103.9E-302093IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MESSSSSSKR AKAPGNIAHC LVDGCNADLS ECREYHRRHK VCEVHSKTAK VTIAGRDQRF  60
CQQCSRFHSL VEFDDGKRSC RKRLDGHNRR RRKPQPDSMA KNSGILFGQQ GTKLLSFSSQ  120
QIFPSAVVSS AWAGVVKTDS DMVLYNNQSH MNGMDSQNSF PDSSGHSYKG GSQFQFMQGS  180
DRSLTEAPLF EHPTSAAGIS SSGQKIFSSG LNDIVDSDRA LSLLSSAPAV TREIGLSHMV  240
QQPASIPRSQ SHGLQYDGLS HFPFAQDFNS KPQDSHVSNS SSPLHFHDML QNAQDESSTI  300
PASQQTLAFM WD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2920931184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17693KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.256090.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g015840.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239238.10.0teosinte glume architecture 1
RefseqXP_004239239.10.0teosinte glume architecture 1
RefseqXP_010321017.10.0teosinte glume architecture 1
RefseqXP_010321018.10.0teosinte glume architecture 1
TrEMBLA0A3Q7HAE10.0A0A3Q7HAE1_SOLLC; Uncharacterized protein
STRINGSolyc05g015840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49202037
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-49SBP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]