PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g015510.2.1
Common NameLOC101246055
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 464aa    MW: 50418.9 Da    PI: 8.7182
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g015510.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.78.9e-40177253278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefD++krsCrrrL++hn+rrrk+++
  Solyc05g015510.2.1 177 CQVEGCNLDLSSAKEYYRKHRVCDSHSKSPKVIVAGVARRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPHQ 253
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32170238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.53174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-37175256IPR004333Transcription factor, SBP-box
PfamPF031102.4E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGTGGYGSDL  60
KCGSSIKSSI SASTDSSPKD GFKVSNFAFE TFNASPEDPS KKLESSKAEV SRNSPPMEAS  120
VGSVEPVIGL KIGKRTCETF GGGSSAKVSS FPPNPASSAA ATKKAKSSTQ NAPIPHCQVE  180
GCNLDLSSAK EYYRKHRVCD SHSKSPKVIV AGVARRFCQQ CSRFHSVSEF DDKKRSCRRR  240
LSDHNARRRK PHQETIQFNS ARLSSLFYDS RQPMNLVLNE AQLIHSRAAA NATWESTQDS  300
KFSITREFTP KPERTGSTNG KSLLERNQFS RAVGAHSNAS SLLLPSKGTT AEVFNRGAKE  360
SMFNMVTGPE FPRALSLLST NSWGSSEPES VSLNHANQTS MPEQMMQAIP PHMSSQYWQA  420
GQHSSDPRYH TLAAANSNSG GSFQEMGVFK APFDTDFYLN ALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-251772501184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232249KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.79840.0flower| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g015510.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239217.10.0squamosa promoter-binding-like protein 12
RefseqXP_010321004.10.0squamosa promoter-binding-like protein 12
RefseqXP_010321005.10.0squamosa promoter-binding-like protein 12
RefseqXP_010321006.10.0squamosa promoter-binding-like protein 12
RefseqXP_010321008.10.0squamosa promoter-binding-like protein 12
TrEMBLA0A3Q7GGA10.0A0A3Q7GGA1_SOLLC; Uncharacterized protein
STRINGSolyc05g015510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-62squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]