PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g014260.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARR-B | ||||||||
Protein Properties | Length: 582aa MW: 65467.1 Da PI: 6.5997 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.7 | 1.1e-22 | 198 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +k Pk+il+lm+++ Lt+e+v+ HLQkYRl Solyc05g014260.2.1 198 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMGIPWLTRENVARHLQKYRL 251 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 78.7 | 2e-26 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+vdD+p+ +++l+++l+k y +v+++ ++eal l+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + Solyc05g014260.2.1 24 VLVVDDDPTWLKILEKMLKKCSY-QVTTCGLAREALYVLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKG 112 89*********************.***************999999**********************6644.8****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ ++el++ Solyc05g014260.2.1 113 VQHGACDYLLKPIRMKELRN 132 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 6.0E-142 | 1 | 534 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-44 | 21 | 168 | No hit | No description |
SuperFamily | SSF52172 | 1.37E-35 | 21 | 146 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.2E-31 | 22 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.4 | 23 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-23 | 24 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.16E-30 | 25 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 196 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-15 | 196 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-19 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 200 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MENSKTSVGF SSPRTDTFPA GLRVLVVDDD PTWLKILEKM LKKCSYQVTT CGLAREALYV 60 LRERKDGFDI VISDVNMPDM DGFKLLEHVG LEMDLPVIMM SVDGETSRVM KGVQHGACDY 120 LLKPIRMKEL RNIWQHVLRK KMQEARDIGN HELDQYDEVW ILNGAEILSG KKRKDFENKH 180 DEREMSDSRC VDSSSMKKAR VVWTVDLHQK FVKAVNQIGF DKVGPKKILD LMGIPWLTRE 240 NVARHLQKYR LYLTRLQKED EAKASFIGTK HPDVSSKEIC SSLSLQNSLD ACTDVTNEKY 300 GCVTGDKTIV QNGKSNICES KVKGVVSVPA AEPRSVVEDN FDPQTTGSKI GLNDSFGLVN 360 TNVKSAKVPI PYCSTGEAPQ PQYKQQDFKP HFRSANGLCH QLLPVVSHQI PVDRTQETCF 420 VNHTPSHEER DRHPDTKNRP SFFKTKNEVV GKFSPVESNV NLYQTVSHQQ TNFHTLEQMP 480 STTWRATSHN VVNGPQSSPG NLTLRSGSIV ASVGEEIHGA SIQGECFLAN NDLPNIEQFD 540 YNDPQPISGV PTYLYDTLRF DYEYPIDSLE GNVIDQGLFI I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-16 | 194 | 256 | 1 | 63 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16930 | 0.0 | flower| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 12629983 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g014260.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239497.1 | 0.0 | two-component response regulator ORR26 isoform X1 | ||||
Swissprot | Q5N6V8 | 1e-126 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A3Q7GFL4 | 0.0 | A0A3Q7GFL4_SOLLC; Two-component response regulator | ||||
STRING | Solyc05g014260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6788 | 24 | 33 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-125 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g014260.2.1 |
Publications ? help Back to Top | |||
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