PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g013540.1.1 | ||||||||
Common Name | LOC101246247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 387aa MW: 42534 Da PI: 7.8104 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Solyc05g013540.1.1 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99 69*******.**********93....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-29 | 50 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-11 | 50 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 50 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.40E-30 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 2.2E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEDAMRRLNQ ETDVPLQNTT NSSTVNKTRS SCSSNKRSLK DTATGPSAVR YRGVRRRPWG 60 RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYPP CPTPTQPTST 120 NDALFNIHSS YKLTSPYYHQ SSNTLKDLSN RPFFHSSSPY GSTGRAHVIG QKSNDSLNML 180 LFRELLSSNS SNNTNNLNVT SSMNMPNLYE QLPNFTMNRN TNSFGSYLPN SSNPVIPSSS 240 VMTTQVPKFD NTVHCTINNN NSSSGATAND DSAAGMDFFP SESSDSGLLE EALNGFFPKP 300 KPIKSVPSSL PNYEFCNIFS QQPQQQEQIN NGGLNSDFGL LSSSLSSFPV DYFPGNLQVA 360 PGDNIMGDIF QYPDLLSIFA AKLQNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 43 | 106 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g013540.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239483.2 | 0.0 | ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A3Q7H8Y9 | 0.0 | A0A3Q7H8Y9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g013540.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 2e-13 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g013540.1.1 |
Entrez Gene | 101246247 |
Publications ? help Back to Top | |||
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