PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g013420.1.1 | ||||||||
Common Name | LOC101265825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 20825.3 Da PI: 9.1312 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.1e-12 | 33 | 78 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+++E+ ++ + + G+g+W++Ia+++ +Rt+ q+ s+ qky Solyc05g013420.1.1 33 GRWSEDEQRAFLIGLDKVGKGNWTRIAKEFVPTRTPTQVASHAQKY 78 8******************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.794 | 27 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.18E-15 | 30 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-10 | 31 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-12 | 31 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-11 | 33 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.97E-9 | 34 | 79 | No hit | No description |
TIGRFAMs | TIGR01557 | 7.6E-14 | 34 | 82 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006338 | Biological Process | chromatin remodeling | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0035066 | Biological Process | positive regulation of histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MANTIKLFGA EIHVNNVEES TSCCTSRRSS KGGRWSEDEQ RAFLIGLDKV GKGNWTRIAK 60 EFVPTRTPTQ VASHAQKYFD RQKENKVNKH KKRSVFDIDL DEESSNTRLQ LLSKRAYNKK 120 DHKEILNEES PISAMPIRYI LPPNGSYACY EFNFMSISST NATPVVRGAS SQSSSASTDD 180 LDLSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24444 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g013420.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232703 | 0.0 | Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239123.1 | 1e-138 | transcription factor KUA1 | ||||
TrEMBL | A0A3Q7H8W6 | 1e-136 | A0A3Q7H8W6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g013420.1.1 | 1e-137 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13677 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 1e-23 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g013420.1.1 |
Entrez Gene | 101265825 |
Publications ? help Back to Top | |||
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