PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g012840.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 224aa MW: 25252.2 Da PI: 9.3426

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g012840.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	106.9	3.2e-33	21	122	1	95
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s ++++ + s ++++s+ Solyc05g012840.1.1 21 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 111 589***********************************************************99944444333455555555554444444 PP TCP 89 ....kaaksaa 95 + ++++ Solyc05g012840.1.1 112 sqenRGVPNSE 122 33332233333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-31	22	117	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.013	24	82	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MKPKRAKTDV IEGHGGRIIR ATGRKDRHSK VSTAKGPKDR RVRLSPNTAI QFYDVQDRLG 60 YDRPSKAIDW LIKEAKAAID ALGEFPNNFH STKLNPKKMQ YSFDQEQSPE FSQENRGVPN 120 SECGVQDKQQ EVNYDIPNLF SSSDGLKIPF LSDLQSYPHG HFLNFQSLQD DTILSSGNHH 180 QGSFFTTTSV NHFPSVLSQN QVFSHREPLQ SSFFPLMSDP LSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-20	29	82	1	54	Putative transcription factor PCF6
5zkt_B	6e-20	29	82	1	54	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g012840.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212303	0.0	Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0298C03, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069120.1	1e-165	transcription factor TCP10-like
TrEMBL	A0A3Q7GFZ6	1e-164	A0A3Q7GFZ6_SOLLC; Uncharacterized protein
STRING	Solyc05g012840.1.1	1e-165	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-37	TCP domain protein 10

Link Out ? help Back to Top
Phytozome	Solyc05g012840.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]