PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g012770.2.1 | ||||||||
Common Name | LOC101253782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 509aa MW: 55396 Da PI: 7.8787 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107 | 9.3e-34 | 216 | 272 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkkvers d++v+ei+Y+g+Hnh+ Solyc05g012770.2.1 216 DDGYNWRKYGQKQVKGSEYPRSYYKCTNPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 272 8****************************************.***************8 PP | |||||||
2 | WRKY | 107 | 9.2e-34 | 394 | 452 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Solyc05g012770.2.1 394 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 452 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 24.26 | 210 | 274 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.7E-30 | 210 | 274 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 213 | 274 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-38 | 215 | 273 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 216 | 272 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-37 | 380 | 454 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-30 | 386 | 454 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.192 | 389 | 454 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-40 | 394 | 453 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 395 | 452 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MAENEGSSSS STSRGQLLRP TITLPPRSSM ESLFSGGSSG ISPGPMTLVS SFFSDNDPDS 60 ECRSFSQLLA GAMTPPAGFT GVRPGFPPLP PPSTAAITQS PTAFTVPPGL SPTSLFDGFF 120 SPGQGPFGMS HQQVLAQLTS QASQAQSQMH IQPNYPSSAT AAALSMSQFQ SLPSNAAANR 180 QIPPTLDPNI VKESSDVSLS DQRSEPASFA VDKPADDGYN WRKYGQKQVK GSEYPRSYYK 240 CTNPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KESGNPNGNY NLQGPYELSS 300 EGLTGNYNKP KEGEPSYSLR MKDQESSQAN DQTSGSSDSE EVGNAETRVD GRDIDERESK 360 RRAVEVHSTE AACSHRTVAE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC 420 TSQGCNVRKH VERAASDPKA VITTYEGKHN HDVPAARNSS HNTANNSMSQ LRPHNPVVDR 480 PAAMRRADFQ SNEQQPIALL RFKEEQSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-42 | 216 | 455 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-42 | 216 | 455 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11585 | 0.0 | flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g012770.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212300 | 0.0 | Solanum lycopersicum chromosome 05 clone C05HBa0057G22, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239088.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-162 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A3Q7GET7 | 0.0 | A0A3Q7GET7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g012770.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4107 | 24 | 45 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-142 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g012770.2.1 |
Entrez Gene | 101253782 |
Publications ? help Back to Top | |||
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