PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g012040.2.1
Common NameLOC101262615
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 559aa    MW: 62329.6 Da    PI: 7.6007
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g012040.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1331e-41233309177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  Solyc05g012040.2.1 233 VCQVHGCNKDLSSSKDYHKRHKVCNEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 309
                         6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33229295IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.419231308IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-39232313IPR004333Transcription factor, SBP-box
PfamPF031104.1E-32234307IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEPLSYALEG RGLIFPDNVE LSVDTVSRNR SIVKEWNLNP FCDVDKSICG FSQEVTENTE  60
FLGSGIADIL KKSAASNPCP GVLSGEMSDG CGKMLSSTSM FNSFEPIPGE VGLGAMFNNS  120
ATKSNNPMSS LIDLKLEELT DHGELRTNQS SKESSILSSP ESSLAAGKAQ TKSSHSRFSI  180
SQVHDQKEEE STTVYREVKS NQSLKRNSAL TSVNSSLQGK RLRTTNFHSE IPVCQVHGCN  240
KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG  300
HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN SKHPKLEHKP  360
FGISQLAISV KNEQFPAKSI QHQYGMRKQD PSKVHTGGTT LSIQEFSKGQ NSSCALSLLS  420
AHSQNLLHNS TDVSPTLRWT VEPNHHVYVK GRDHNLEKSP RVSVVKSLTP TELYSSDVAE  480
QDVVVQVPDC EAVSFGIQRD HGHDQRSNSI NSKNCLSLEG GPTMDLVQLS SHLQRVEQQK  540
NSVQVKQEND IFCSFTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28229307684squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.188460.0fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g012040.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239031.10.0squamosa promoter-binding-like protein 6
TrEMBLA0A3Q7GC950.0A0A3Q7GC95_SOLLC; Uncharacterized protein
STRINGSolyc05g012040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-50SBP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]