PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009770.1.1
Common NameLOC101248676
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 287aa    MW: 32562.9 Da    PI: 7.3386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009770.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05120139120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C  C+k+F+r  n++ H+
  Solyc05g009770.1.1 120 FSCAVCNKTFNRFNNMQMHM 139
                         89*****************9 PP
2zf-C2H215.64.5e-05205227123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +Cgk F  + + ++H +++
  Solyc05g009770.1.1 205 FKCRKCGKNFAVRGDWRTHEKNC 227
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-5117141No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5120139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055120147IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355180168200IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.81E-6187225No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5191225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.85205225IPR007087Zinc finger, C2H2
SMARTSM0035546205225IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQNCHNNSIT YLSSSDQLVE DDQLSTVLSL GPPGQKNSTI FHDYFSSSSN CHEFQSYNNQ  60
ESVTVALRID SSSTISSNNN NNPSRNKGDH NSSTNNNISL VNGQYWIPTP AQILVGPTQF  120
SCAVCNKTFN RFNNMQMHMW GHGSQYRKGP DSLKGTKQAS SMLRLPCYCC AEGCKNNIDH  180
PRTKPLKDFR TLQTHYKRKH GTKPFKCRKC GKNFAVRGDW RTHEKNCGKL WFCICGSDFK  240
HKRSLKDHVK AFGYGHAPHS ENSYYHTEGD EDEEEEDDDE EEEEVV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009770.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239423.10.0zinc finger protein WIP6
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A3Q7GFM80.0A0A3Q7GFM8_SOLLC; Uncharacterized protein
STRINGSolyc05g009770.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]