PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009450.1.1
Common NameLOC101256485
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 342aa    MW: 38031.1 Da    PI: 4.5087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009450.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19101150154
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA  a++  r+++e
  Solyc05g009450.1.1 101 SKYRGVRQRK-WGKWAAEIRDpF-----KsRRVWLGTYNTAEEASHAYEMKRLEFE 150
                         89*******9.**********66.....34**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.53E-23101142No hitNo description
SuperFamilySSF541715.04E-17101149IPR016177DNA-binding domain
PfamPF008473.5E-13101151IPR001471AP2/ERF domain
PROSITE profilePS5103220.415102160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-22102150IPR001471AP2/ERF domain
SMARTSM003801.5E-19102166IPR001471AP2/ERF domain
PRINTSPR003675.5E-10103114IPR001471AP2/ERF domain
PRINTSPR003675.5E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKMSESRRQS QKSKIREESA RPMRKIRIVC DDPEATDSSD DEGVDVSKPK RFVREIYLPV  60
VSSFTLKKVP ETESSCQDSN NGDKKRAKTP KTPSGPRPSS SKYRGVRQRK WGKWAAEIRD  120
PFKSRRVWLG TYNTAEEASH AYEMKRLEFE AMAKSNSNTD VSEKSSNNEC NNKNHRKVNN  180
AGCVSEEDDS AQSLVSHTSH TSPASVFEMD SLTSGSAAVS EVNNNDKLVV QLVDVDKMGL  240
MEDSLSLADI GARMDFDTEM DMFFAGNDNF DQNLDDFAVN DFEDLPICGL DEQLPAGLPD  300
FDFDFDFDGY NEACAWMDDV AATPLMNGTT TTTPLNIALC P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.75440.0cell culture| flower| fruit| leaf| root| trichome
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009450.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238935.10.0ethylene-responsive transcription factor ERF118
RefseqXP_019069591.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A3Q7GBC40.0A0A3Q7GBC4_SOLLC; Uncharacterized protein
STRINGSolyc05g009450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-32ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]