PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009230.1.1
Common NameLOC101244584
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 275aa    MW: 31991.9 Da    PI: 7.0481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-182067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll++++  +G g+W++ a++ g++Rt+k+c++rw++yl
  Solyc05g009230.1.1 20 RGPWTLEEDNLLIHYISTHGEGRWNALAKCAGLKRTGKSCRLRWLNYL 67
                        89********************************************97 PP
2Myb_DNA-binding52.88.9e-1773116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Solyc05g009230.1.1  73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4181567IPR017930Myb domain
SuperFamilySSF466891.72E-3117114IPR009057Homeodomain-like
SMARTSM007171.6E-161969IPR001005SANT/Myb domain
PfamPF002491.9E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-242174IPR009057Homeodomain-like
CDDcd001671.87E-112267No hitNo description
PROSITE profilePS5129425.75168122IPR017930Myb domain
SMARTSM007172.7E-1572120IPR001005SANT/Myb domain
PfamPF002498.9E-1673116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2375121IPR009057Homeodomain-like
CDDcd001672.04E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSNNNNNILS NKDELFELRR GPWTLEEDNL LIHYISTHGE GRWNALAKCA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARQLKVDSN SKKFVEAIKN LWVPRLLEKM EQCSSSSSIE KKLPNLPLIN NNQEPCTKHN  180
KSHDIAANNN NTTWGSQESS LDSMHVLNEN MNSTHQYDEC YHVGSFIQQP EHLTYQEMSI  240
SECDVAEADW LNDEGSLWNM DEFWQFKKLG DVDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009230.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239413.20.0transcription factor MYB62
SwissprotQ9C9G72e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A3Q7GB930.0A0A3Q7GB93_SOLLC; Uncharacterized protein
STRINGSolyc05g009230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-88myb domain protein 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]