PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g007890.2.1

Common Name

LOC101248294

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 340aa MW: 38069.9 Da PI: 7.5215

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g007890.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Solyc05g007890.2.1 22 KPRLKWTPDLHQRFVDAVSQLGGPDKATPKSLMRVMNIHGLTLYHLKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.224	19	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-31	20	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	5.1E-8	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-22	149	196	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MALHQNAQQN KDMNLVLSSD AKPRLKWTPD LHQRFVDAVS QLGGPDKATP KSLMRVMNIH 60 GLTLYHLKSH LQKYRLGKSS VTDQSFDENK QEVKLDLCEI VPNDDDTKGN EISRGLKQRT 120 YFDTELPQSD HKLSLGVCDG SQNHMNESFQ IARALQMQMD VQRKLHHQIE VQRHLQLRIE 180 AQGKYLQSVL KKAQETLAGY GTSSGVELAK AELSQLVSMV NMGCCPSSSL TEIDCSISKD 240 IENKTSKEGI LCSIESSLTS SESSARKEGQ NNSMNNKNTT CIGLPLNQES KGKKRGRHNI 300 CGDEQSSAKR YLETIDLNRK CPNEYDENVT KVIDLNEYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	21	78	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g007890.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238822.1	0.0	myb family transcription factor PHL8
Swissprot	F4I274	7e-74	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A3Q7GAK0	0.0	A0A3Q7GAK0_SOLLC; Uncharacterized protein
STRING	Solyc05g007890.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	3e-74	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc05g007890.2.1
Entrez Gene	101248294

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]