PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc05g007880.2.1

Common Name

LOC101248009

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 442aa MW: 49069.2 Da PI: 6.5696

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g007880.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	110	170	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss Solyc05g007880.2.1 110 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 170 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	110	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDEKINLEGE VTQSKQVDEL 60 VDPAADSSIE PETSSGISDD IKMQDADKET LSSKSVEEED SSEEKALKKP DKLIPCPRCN 120 SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR 180 VEAAAHGMHL PASRTNGTVL TFGSDKPLCD SMVSALNLAE NSHNMHRNEY HGSEQRMPTI 240 GNDQSNGSCS TASSVTDKES SAGTHDLANW SNFQPFPPQV PYFQGAPWPY SGFPVSFYPA 300 APYWGCTVSN PWNVPWLSSN QSVHNNSPTS PTLGKHSRDE SKLDPSQSRR RDTTLQDREG 360 ERCVLIPKTL RIHDPNEAAK SSIWSTLGIR NEKIDSTRGT MLFSAFNPKA DHRNRELDTS 420 FALQANPAAL SRSLHFREST R*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDEKINLEGE VTQSKQVDEL  60
VDPAADSSIE PETSSGISDD IKMQDADKET LSSKSVEEED SSEEKALKKP DKLIPCPRCN  120
SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR  180
VEAAAHGMHL PASRTNGTVL TFGSDKPLCD SMVSALNLAE NSHNMHRNEY HGSEQRMPTI  240
GNDQSNGSCS TASSVTDKES SAGTHDLANW SNFQPFPPQV PYFQGAPWPY SGFPVSFYPA  300
APYWGCTVSN PWNVPWLSSN QSVHNNSPTS PTLGKHSRDE SKLDPSQSRR RDTTLQDREG  360
ERCVLIPKTL RIHDPNEAAK SSIWSTLGIR NEKIDSTRGT MLFSAFNPKA DHRNRELDTS  420
FALQANPAAL SRSLHFREST R*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14935	0.0	flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g007880.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238821.1	0.0	cyclic dof factor 1 isoform X1
TrEMBL	A0A3Q7GDS7	0.0	A0A3Q7GDS7_SOLLC; Uncharacterized protein
STRING	Solyc05g007880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-79	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Solyc05g007880.2.1
Entrez Gene	101248009

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]