PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g007870.1.1 | ||||||||
Common Name | SlMYB117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 418aa MW: 46562.4 Da PI: 7.5517 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 120 | 165 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ Solyc05g007870.1.1 120 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 172 | 215 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ Solyc05g007870.1.1 172 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.413 | 115 | 166 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 119 | 168 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-27 | 120 | 213 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-15 | 120 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 121 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-13 | 123 | 164 | No hit | No description |
PROSITE profile | PS51294 | 26.846 | 167 | 221 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 171 | 219 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 172 | 214 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 174 | 220 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-11 | 174 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPESLDEGKG RRGSWDFQFL NKGGSFFSSR 60 SLDEAQNSEE NNESIDLNAS CFNDEKQITM HTTFNSNNNS SSSGCNGKET ENGQSKLCAR 120 GHWRPAEDAK LKELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE 180 ERLMAAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKMGQFVYRR 240 STTTVVEEAD NSSGQNSVNH FSMKMNNNNG PNGWVVYGPN GSPHMAASAG EAATPSSTNN 300 VPLYSPYSPF AAPPFDSLPA GHCGNEMINV LNQQGGRSWD RQREVTHQHP SNSLMMMNNM 360 QQDQSQYVLQ FPYVTQISSS PSTTEQGLVK EDKRSNNNSD NTTIAPPFID FLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 120 | 220 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g007870.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX522478 | 0.0 | Solanum lycopersicum R2R3 MYB gene, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307310.1 | 0.0 | transcription factor MYB117 | ||||
TrEMBL | K4BWW2 | 0.0 | K4BWW2_SOLLC; R2R3 MYB | ||||
STRING | Solyc05g007870.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-76 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g007870.1.1 |
Entrez Gene | 101263611 |
Publications ? help Back to Top | |||
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